As one of the main channels to support basic research in China, NSFC plays an important supporting role in promoting basic scientific research in China. Based on the statistical analysis of the support of Natural Science Foundation of China project of Fujian Province, six provinces and one city in East China funded by the National Natural Science Foundation of China is compared out the gap in Fujian, and reflect the current situation and existing problems of natural science research in Fujian Province. Finally, countermeasures and suggestions for Fujian Province to improve the strength of basic scientific research are put forward in order to provide information reference for relevant management departments.