Innovation of supervision is not only the inevitable requirement of development of social organizations, but also an important part of the social management system. This paper analyzes the current situation of social organization supervision innovation in China, and summarizes the main obstacles that affect the implementation of the social organization's supervision innovation strategy: the lack of supervision innovation consciousness; the lack of clear legal protection; current supervision mechanism increases the difficulty of innovation; the main supervision bodies do not play their role in promoting innovation; restriction of information chain effect the supervision innovation. And the paper analyzes the strategic target of the social organization's supervision innovation in our country from three stages, and at last set up five kinds of strategies to realize the social organization's supervision innovation: innovating supervision consciousness, innovating supervision laws; innovating supervision mechanism; innovating the main body of innovation and supervision tools.