Based on the theory of emeddedness、clusters’innovation，through case analysis and data coding, the paper explored the relationship mechanism between multinational enterprises’embeddedness and the innovation performance of logistics clusters by the surveys and interviews of Fuzhou、Xiamen and Quanzhou. The paper found that：①there is a positive correlation between multinational enterprises’embeddedness and the innovation performance of logistics clusters；②the knowledge resources about technology、management and market played a mediating role between them. Finally，the paper made the suggestion about introduction of multinational enterprises and the development of logistics clusters through the conclusion.